PayPal often takes a bit longer to complete processing of a buyer's payment than it takes for the buyer to finish checkout, so we do some things to stall the buyer for time while we're still waiting to receive confirmation of completed payment from Paypal, at which time we process the buyer's order for you (save the order details in your E-junkie Transaction Log, issue any codes or download links purchased, send thank-you and sale notification emails).
If you're not selling any digital goods such as downloads, you can disable "Wait for pending payments" in your E-junkie Seller Admin > Payment Preferences screen, so we would process the order as soon as the buyer finishes checkout, without waiting for final payment confirmation. In this case, you could also bypass the Complete Purchase button at the end of checkout, so buyers would be redirected to a thank-you page automatically (which we DO NOT recommend if you're selling digital goods); to do this, go into your PayPal account > Profile > My Selling Tools > Website Preferences screen, set Auto-Return: ON and Payment Data Transfer: ON, and provide this Auto-Return URL where indicated:
We don't have any way of marking orders as shipped or dispatched at our end. Once we receive the order details back from PayPal after checkout, we process the order for you, and that's the end of our involvement in order handling for you. If you wish, you could use our custom/third-party Integration method to have us forward the order details to a custom script at your end when we process the order, so your script could do whatever else you wish with that data, such as managing a list of pending/shipped orders at your end.