I am excited to get started with your company. A few quick questions. Can I sell just a bundle (i.e. full album, not individual tracks)?
Sure, you can sell packages. Please see http://www.e-junkie.com/ej/help.package.php
My products are electronic files, if we work with you are you able to work with two electronic files for each purchase a customer makes? It this considered a package?
Yes, it is a package. Please see http://www.e-junkie.com/ej/help.package.php
I have one bonus offer if one of my ebooks is purchased through ClickBank. How do I add the bonus ebook download to ejunkie so that the customer gets both or how do I add the bonus ebook to each of the 5 products.
The following link will provide you with all the details http://www.e-junkie.com/ej/help.package.php
Should that work for products with generated codes? Is there another way to do it for those, other than making a key generator for each bundle combination?
The only way is to make a keygen for the bundle combo
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